Publications since 1996

Charles University, 1^st Faculty of Medicine

Institute of Cellular Biology and Pathology

Albertov 4, 12801 Praha 2, Czech Republic - tel.: +420 224 968 001, e-mail: lge @ lf1.cuni.cz

	Publications since 1996
	2016 Markova, K., M. Uzlikova, P. Tumova, K. Jirakova, G. Hagen, J. Kulda and E. Nohynkova (2016). Absence of a conventional spindle mitotic checkpoint in the binucleated single-celled parasite Giardia intestinalis. Eur J Cell Biol 95(10): 355-367. Trousil, J., Filippov, SK., Hrubý, M., Mazel, T., Syrová, Z., Cmarko, D., Svidenská, S., Matějková, J., Kováčik, L., Porsch, B., Konefał, R., Lund, R., Nyström, B., Raška, I. and Štěpánek, P. System with embedded drug release and nanoparticle degradation sensor showing efficient rifampicin delivery into macrophages Nanomedicine, 2016. Epub ahead of print. Markova K., Uzlikova M., Tumova P., Jirakova K., Hagen G., Kulda J., and Nohynkova E. Absence of a conventional spindle mitotic checkpoint in the binucleated single-celled parasite Giardia intestinalis European Journal of Cell Biology, 2016. Epub ahead of print. Farkaš R., Pečeňová L., Mentelová L., Beňo M., Beňová-Liszeková D., Mahmoodová1 S., Tejnecký V., Raška O., Juda P., Svidenská S., Hornáček M., Chase B. A., and Raška I. Massive excretion of calcium oxalate from late prepupal salivary glands of Drosophila melanogaster demonstrates active nephridial-like anion transport. Development Growth and Differentiation, 2016. 58: p. 562-574. Legartová S., Sehnalová P., Malyšková B., Küntziger T., Collas P., Cmarko D., Raška I., Sorokin D. V., Kozubek S., and Bártová E. Localized Movement and Levels of 53BP1 Protein are Changed by γ-irradiation in PML Deficient Cells Journal of Cellular Biochemistry, 2016. 117: p. 2583-2596. Kaman O., Dědourková T., Koktan J., Kuličková J., Veverka P., Havelek R., Královec K., Turnovcová K., Jendelová P., Schröfel A., and Svoboda L. Silica-coated manganite and Mn-based ferrite nanoparticles for biological and medical applications: a comparative study of cytotoxicity Journal of Nanoparticle Research 2016. 18(4): p. 1-18. Smirnov E., Hornacek M., Kovacik L., Mazel T., Schrofel A., Svidenska S., Skalnikova M., Bartova E., Cmarko D., and Raska I. Reproduction of the FC/DFC units in nucleoli Nucleus, 2016. 7(2): p. 203-215. Bolková J. and Lanctôt C. Live imaging reveals spatial separation of parental chromatin until the four-cell stage in Caenorhabditis elegans embryos. International Journal of Developmental Biology, 2016. 60(1-2-3): p. 5-12. Petrova S., Klepac D., Konefal R., Kereïche S., Kováčik L., and Filippov S. Synthesis and Solution Properties of PCL-b-PHPMA Diblock Copolymers Containing Stable Nitroxyl Radicals Macromolecules, 2016. 49(15): p. 5407-5417. Smirnov E., Cmarko D., Mazel T., Hornáček M., and Raška I. Nucleolar DNA: the host and the guests Histochemistry and Cell Biology, 2016. 145(4): p. 359-372. Křížek P., Lukeš T., Ovesný M., Fliegel K., and Hagen G. SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy. Bioinformatics, 2016. 32(2): p. 318-320. Bolková J. and Lanctôt C. Quantitative gene expression analysis in Caenorhabditis elegans using single molecule RNA FISH Methods, 2016. 98: p. 42-49. 2015 Matuszewska A., Uchman M., Adamczyk-Wozniak A., Sporzynski A., Pispas S., Kovacik L., and Stepanek M. Glucose-Responsive Hybrid Nanoassemblies in Aqueous Solutions: Ordered Phenylboronic Acid within Intermixed Poly(4-hydroxystyrene)-block-poly(ethylene oxide) Block Copolymer Biomacromolecules, 2015. 16(12): p. 3731-9. Lanctôt C. Single Cell Analysis Reveals Concomitant Transcription of Pluripotent and Lineage Markers During the Early Steps of Differentiation of Embryonic Stem Cells Stem Cells, 2015. 33(10): p. 2949-60. Chughtai A., Kaššák F., Kostrouchová M., Novotný J., Krause M., Saudek V., Kostrouch Z., and Kostrouchová M. Perilipin-related protein regulates lipid metabolism in C. elegans. PeerJ, 2015. 3: p. e1213. Sorokin D. V., Stixová L., Sehnalová P., Legartová S., Suchánková J., Šimara P., Kozubek S., Matula P., Skalníková M., Raška I., and Bártová E. Localized movement and morphology of UBF1 - positive nucleolar regions are changed by g-irradiation in G2 phase of the cell cycle Nucleus, 2015. 6(4): p. 301-313. Zima V., Šebková K., Šimečková K., Dvořák T., Saudek V., and Kostrouchová M. Prorenin Receptor Homologue VHA-20 is Critical for Intestinal pH Regulation, Ion and Water Management and Larval Development in C. elegans. Folia Biologica, 2015. 61(5): p. 168-77. Kania G., Kwolek U., Nakai K., Yusa S. I., Bednar J., Wójcik T., Chlopicki S., Skórka T., Szuwarzyński M., Szczubialka K., Kepczynski M., Nowakowska M. Stable polymersomes based on ionic–zwitterionic block copolymers modified with superparamagnetic iron oxide nanoparticles for biomedical applications Journal of Materials Chemistry B, 2015. 3(27): p. 5523-5531. Tashiro S. and Lanctôt C. The International Nucleome Consortium Nucleus, 2015. 6(2): p. 89-92. Petrova S., Venturini C. G., Jäger A., Jäger E., Černoch P., Kereïche S., Kováčik L., Raška I., and Štěpánek P. Novel thermo-responsive double-hydrophilic and hydrophobic MPEO-b-PEtOx-b-PCL triblock terpolymers: Synthesis, characterization and self-assembly studies Polymer, 2015. 59: p. 215-225. Kostrouchova M. and Kostrouch Z. Nuclear receptors in nematode development: Natural experiments made by a phylum Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2015. 1849(2): p. 224-237. Farkaš R., Beňová-Liszeková D., Mentelová L., Mahmoodová S., Ďatková Z., Beňo M., Pečeňová L., Raška O., Šmigová J., Chase B. A., Raška I., and Mechler B. M. Vacuole dynamics in the salivary glands of Drosophila melanogaster during prepupal development Development Growth and Differentiation, 2015. 57: p. 74-96. 2014 Stixová L., Sehnalová P., Legartová S., Suchánková J., Hrušková T., Kozubek S., Sorokin D. V., Matula P., Raška I., Kovařík A., Fulneček J., and Bártová E. HP1β-dependent recruitment of UBF1 to irradiated chromatin occurs simultaneously with CPDs Epigenetics and Chromatin, 2014. 7:39. Smirnov E., Borkovec J., Kovacik L., Svidenska S., Schrofel A., Skalnikova M., Svindrych Z., Krizek P., Ovesny M., Hagen G. M., Juda P., Michalova K., Cardoso M. V., Cmarko D., and Raska I. Separation of replication and transcription domains in nucleoli Journal of Structural Biology, 2014. 188(3): p. 259-266. Ovesný M., Křížek P., Švindrych Z., and Hagen G. M. High density 3D localization microscopy using sparse support recovery Optics Express, 2014. 22(25): p. 31263-31276. Lukeš T., Křížek P., Švindrych Z., Benda J., Ovesný M., Fliegel K., Klíma M., and Hagen G. M. Three-dimensional super-resolution structured illumination microscopy with maximum a posteriori probability image estimation Optics Express, 2014. 22(24): p. 29805-29817. Krizek G. O., Hagen G. M., Křížek P., Havlová M., and Křížek M. Optical Lattices on Wings of Apatura Butterflies Entomological News, 2014. 124(3): p. 176-185. Lizcova L., Zemanova Z., Lhotska H., Zuna J., Hovorkova L., Mejstrikova E., Malinova E., Rabasova J., Raska I., Sramkova L., Stary J., and Michalova K. An unusual case of high hyperdiploid childhood ALL with cryptic BCR/ABL1 rearrangement Molecular Cytogenetics, 2014. 7:72. Šmigová J., Jůda, P., Krejčí, J., Raška, I. Structural Basis of Polycomb Bodies Folia Biologica, 2014. 60(S1): p. 13-20. Stixová L., Hrušková, T., Sehnalová, P., Legartová, S., Svidenská, S., Kozubek, S., Bártová, E. Advanced Microscopy Techniques Used for Comparison of UVA- and γ-Irradiation-Induced DNA Damage in the Cell Nucleus and Nucleolus Folia Biologica, 2014. 60(S1): p. 76-84. Pagáčová E., Falk, M., Falková, I., Lukášová, E., Michalová, K., Oltová, A., Raška, I., Kozubek, S. Frequent Chromatin Rearrangements in Myelodysplastic Syndromes – What Stands Behind? Folia Biologica, 2014. 60(S1): p. 1-7. Kostrouch D., Kostrouchova M., Yilma P., Chughtai A. A., Novotny J. P., Novak P., Kostrouchova V., Kostrouchova M., and Kostrouch Z. SKIP and BIR-1/Survivin have potential to integrate proteome status with gene expression Journal of Proteomics, 2014. 110C(0): p. 93-106. Uchman M., Pispas S., Kováčik L., and Štěpánek M. Morphologically Tunable Coassembly of Double Hydrophilic Block Polyelectrolyte with Oppositely Charged Fluorosurfactant Macromolecules, 2014. 47(20): p. 7081-7090. Křížek P., Winter P. W., Švindrych Z., Borkovec J., Ovesný M., Roess D. A., Barisas B. G., and Hagen G. M. Imaging of insulin receptors in the plasma membrane of cells using super-resolution single molecule localization microscopy, in Microscopy: advances in scientific research and education. A. Mendez-Vilas, Editor. 2014, Formatex Research Center. Juda P., Smigova J., Kovacik L., Bartova E., and Raska I. Ultrastructure of cytoplasmic and nuclear inosine-5'-monophosphate dehydrogenase 2 "rods and rings" inclusions Journal of Histochemistry & Cytochemistry, 2014. 62(10): p. 739-50. Vágnerová L., Gombitová A., Cmarko D., and Lanctôt C. Distinct chromatin organization in the germ line founder cell of the Caenorhabditis elegans embryo Development Growth and Differentiation, 2014. 56(9): p. 605-614. Wytrwal M., Bednar, J., Nowakowska, M., Wydro, P., Kepczynski, M. Interactions of serum with polyelectrolyte-stabilized liposomes: Cryo-TEM studies Colloids and Surfaces B: Biointerfaces, 2014. 120: p. 152-9. Kováčik L., Kereïche, S., Matula, P., Raška, I. Sub-Volume Averaging of Repetitive Structural Features in Angularly Filtered Electron Tomographic Reconstructions Folia Biologica, 2014. 60(S1): p. 66-70. Kereïche S., Kováčik, L., Pevala, V., Ambro, L., Bellová, J., Kutejová, E., Raška, I. Three-Dimensional Reconstruction of the S885A Mutant of Human Mitochondrial Lon Protease Folia Biologica, 2014. 60(S1): p. 62-65. Schrofel A., Kratosova G., Safarik I., Safarikova M., Raska I., and Shor L. M. Applications of biosynthesized metallic nanoparticles - A review Acta Biomaterialia, 2014. 10(10): p. 4023-4042. Lukeš T., Hagen G. M., Křížek P., Švindrych Z., Fliegel K., and Klíma M. Comparison of image reconstruction methods for structured illumination microscopy Proceedings of SPIE, 2014. 9129: p. 91293J-91293J-13. Ovesný M., Křížek P., Borkovec J., Švindrych Z., and Hagen G. M. ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging Bioinformatics, 2014. 30(16): p. 2389-90. Sehnalová P., Legartová S., Cmarko D., Kozubek S., and Bártová E. Recruitment of HP1β to UVA-induced DNA lesions is independent of radiation-induced changes in A-type lamins Biology of the Cell, 2014. 106(5): p. 151-165. Mackova A., Malinsky P., Miksova R., Pupikova H., Khaibullin R. I., Slepicka P., Gombitová A., Kovacik L., Svorcik V., and Matousek J. Characterization of PEEK, PET and PI implanted with Mn ions and sub-sequently annealed Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 2014. 325: p. 89-96. Farkaš R., Ďatková Z., Mentelová L., Löw P., Beňová-Liszeková D., Beňo M., Sass M., Řehulka P., Řehulková H., Raška O., Kováčik L., Šmigová J., Raška I., and Mechler B. M. Apocrine Secretion in Drosophila Salivary Glands: Subcellular Origin, Dynamics, and Identification of Secretory Proteins PLoS ONE, 2014. 9(4): p. e94383. Kováčik L., Kerïeche S., Höög J. L., Jůda P., Matula P., and Raška I. A simple Fourier filter for suppression of the missing wedge ray artefacts in single-axis electron tomographic reconstructions Journal of Structural Biology, 2014. 186(1): p. 141-152. Krabcova I., Jirsova K., and Bednar J. Rapid cooling of the amniotic membrane as a model system for the vitrification of posterior corneal lamellae Cell and Tissue Banking, 2014. 15(1): p. 165-173. Hůlková H., Svojanovský J., Ševela K., Krusová D., Hanuš J., Vězda P., Souček M., Márová I., Feit J., Zambo I., Kovačevicova M., Vlášková H., Kostrouchová V., Novák P., Kostrouch Z., and Elleder M. Systemic AL amyloidosis with unusual cutaneous presentation unmasked by carotenoderma Amyloid, 2014. 21(1): p. 57-61. Kratochvílová H., Hejzlarová K., Vrbacký M., Mráček T., Karbanová V., Tesařová M., Gombitová A., Cmarko D., Wittig I., Zeman J., and Houštěk J. Mitochondrial membrane assembly of TMEM70 protein Mitochondrion, 2014. 15(0): p. 1-9. Benbahouche N. E. H., Iliopoulos I., Török I., Marhold J., Henri J., Kajava A. V., Farkaš R., Kempf T., Schnölzer M., Meyer P., Kiss I., Bertrand E., Mechler B. M., and Pradet-Balade B. Drosophila Spag Is the Homolog of RNA Polymerase II-associated Protein 3 (RPAP3) and Recruits the Heat Shock Proteins 70 and 90 (Hsp70 and Hsp90) during the Assembly of Cellular Machineries Journal of Biological Chemistry, 2014. 289(9): p. 6236-6247. Maška M., Ulman V., Svoboda D., Matula P., Matula P., Ederra C., Urbiola A., España T., Venkatesan S., Balak D. M. W., Karas P., Bolcková T., Štreitová M., Carthel C., Coraluppi S., Harder N., Rohr K., Magnusson K. E. G., Jaldén J., Blau H. M., Dzyubachyk O., Křížek P., Hagen G. M., Pastor-Escuredo D., Jimenez-Carretero D., Ledesma-Carbayo M. J., Muñoz-Barrutia A., Meijering E., Kozubek M., and Ortiz-de-Solorzano C. A benchmark for comparison of cell tracking algorithms Bioinformatics, 2014. 30(11): p. 1609-17. Schröfel A., Cmarko D., Bártová E., and Raška I. Gold Nanoparticles for High Resolution Imaging in Modern Immunocytochemistry in A. Prokop, Y. Iwasaki, and A. Harada, (eds). Intracellular Delivery II, 2014, Springer Netherlands. p. 189-206. Cmarko D., Ligasová A., and Koberna K. Tracking DNA and RNA Sequences at High Resolution in J. Kuo, (ed). Electron Microscopy, 2014, Humana Press. p. 343-366. 2013 Šmigová J., Juda P., Bártová E., and Raška I. Dynamics of Polycomb chromatin domains under conditions of increased molecular crowding Biology of the Cell, 2013. 105(11): p. 519-534. Karewicz A., Bielska D., Loboda A., Gzyl-Malcher B., Bednar J., Jozkowicz A., Dulak J., and Nowakowska M. Curcumin-containing liposomes stabilized by thin layers of chitosan derivatives Colloids and Surfaces B: Biointerfaces, 2013. 109(0): p. 307-316. Lanctot C. and Meister P. Microscopic analysis of chromatin localization and dynamics in C. elegans Methods Mol Biol, 2013. 1042: p. 153-72. Papagiannouli F. and Mechler B. M. Modeling Tumorigenesis in Drosophila: Current Advances and Future Perspectives in Y. Cheng, (ed). Future Aspects of Tumor Suppressor Gene, 2013, InTech. Mikoláš P., Kollárová J., Šebková K., Saudek V., Yilma P., Kostrouchová M., Krause M. W., Kostrouch Z., and Kostrouchová M. GEI-8, a Homologue of Vertebrate Nuclear Receptor Corepressor NCoR/SMRT, Regulates Gonad Development and Neuronal Functions in Caenorhabditis elegans PLoS ONE, 2013. 8(3): p. e58462. Popov A., Smirnov E., Kováčik L., Raška O., Hagen G., Stixová L., and Raška I. Duration of the first steps of the human rRNA processing Nucleus, 2013. 4(2): p. 134-141. Kratošová G., Vávra I., Horská K., Životský O., Němcová Y., Bohunická M., Slabotinský J., Rosenbergová K., Kadilak A., and Schröfel A. Synthesis of Metallic Nanoparticles by Diatoms and Chrysopytes– Prospect and Applications, in Green Biosynthesis of Nanoparticles - Mechanisms and Applications. M. Rai and C. Posten, Editors. 2013, CABI Publishing. p. 256. 2012 Varecha M., Paclova D., Prochazkova J., Matula P., Cmarko D., and Kozubek M. Knockdown of apoptosis-inducing factor disrupts function of respiratory complex I Biocell, 2012. 36(3): p. 121-6. Křížek P, Hagen GM Current optical sectioning systems in fluorescence microscopy. In A. Méndez-Vilas, A. (ed.) Current Microscopy Contributions to Advances in Science and Technology, FORMATEX, Badajoz, Spain, 2012, pp. 826-832. Křížek P, Raška I, Hagen GM. Flexible structured illumination microscope with a programmable illumination array. Opt Express. 2012; 20(22):24585-99. Korčeková D, Gombitová A, Raška I, Cmarko D, Lanctôt C. Nucleologenesis in the Caenorhabditis elegans Embryo. PLoS One. 2012; 7(7):e40290. Štěpánek M, Škvarla J, Uchman M, Procházka K, Angelov B, Kováčik L, Garamus VM, Mantzaridis Ch, Pispas S. Wormlike core–shell nanoparticles formed by co-assembly of double hydrophilic block polyelectrolyte with oppositely charged fluorosurfactant. Soft Matter. 2012;8:9412-9417. Křížek M, Křížek P. Why has nature invented three stop codons of DNA and only one start codon? J Theor Biol. 2012 Jul 7;304:183-7. Papagiannouli F and Mechler BM. Refining the Role of Lgl, Dlg, and Scrib in Tumor Suppression and Beyond: Learning from the Old Time Classics. In Tumor Suppressor Genes, Peter Cheng, ed. Rijeka, Croatia: InTech, 2012. pp. 181-220. Virágh E, Gorjánácz M, Török I, Eichhorn T, Kallakuri S, Szlanka T, Kiss I, Mechler BM. Specific Cooperation Between Imp-α2 and Imp-β/Ketel in Spindle Assembly During Drosophila Early Nuclear Divisions. G3 (Bethesda). 2012; 2(1):1-14. Stixová L, Matula P, Kozubek S, Gombitová A, Cmarko D, Raška I, Bártová E. Trajectories and nuclear arrangement of PML bodies are influenced by A-type lamin deficiency. Biol Cell. 2012; 104(7):417-32. Kepczynski M, Jamróz D, Wytrwal M, Bednar J, Rzad E, Nowakowska M. Interactions of a Hydrophobically Modified Polycation with Zwitterionic Lipid Membranes. Langmuir. 2012; 28(1):676-88. Scheffer MP, Eltsov M, Bednar J, Frangakis AS. Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro. J Struct Biol. 2012; 178(2):207-14. 2011 Meyer S, Becker NB, Syed SH, Goutte-Gattat D, Shukla MS, Hayes JJ, Angelov D, Bednar J, Dimitrov S, Everaers R. From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem. Nucleic Acids Res. 2011; 39(21):9139-54. Kepczynski M, Lewandowska J, Witkowska K, Kędracka-Krok S, Mistrikova V, Bednar J, Wydro P, Nowakowska M. Bilayer structures in dioctadecyldimethylammonium bromide/oleic acid dispersions. Chem Phys Lipids. 2011; 164(5):359-67. Bednar J, Dimitrov S. Chromatin under mechanical stress: from single 30 nm fibers to single nucleosomes. FEBS J. 2011; 278(13):2231-43. Raska I, Gruenbaum Y, Hermann H, Neugebauer K. Chromatin organization, structure and dynamics. Nucleus 2011; 2(5):331. Farkas R, Kucharova-Mahmood S, Mentelova L, Juda P, Raska I, Mechler BM. Cytoskeletal proteins regulate chromatin access of BR-C transcription factor and Rpd3-Sin3A histone deacetylase complex in Drosophila salivary glands. Nucleus 2011; 2(5):489-99. Meshorer E, Herrmann H, Raska I. Nuclear visions enhanced: chromatin structure, organization and dynamics. EMBO Rep. 2011; 12(8):748-50. Matousek J, Hrach R, Svec M, Pavlik J, Novak S, Kovacik L. Experimental and computational study of morphological and electrical properties of tin/plasma polymer nanocomposites Surface and Coatings Technology 2011; 205:63-66. Smigová J, Juda P, Cmarko D, Raska I. Fine structure of the "PcG body" in human U-2 OS cells established by correlative light-electron microscopy. Nucleus 2011; 2:219-28. doi: 10.4161/nucl.2.3.15737 Křížek P, Raška I, Hagen GM. Minimizing detection errors in single molecule localization microscopy. Opti Express 2011; 19(4):3226-35. Seguí-Simarro JM, Corral-Martínez P, Corredor E, Raska I, Testillano PS, Risueno MC. A change of developmental program induces the remodeling of the interchromatin domain during microspore embryogenesis in Brassica napus L. J Plant Physiol. 2011; 168(8):746-57. Mašata M, Jůda P, Raška O, Cardoso MC, Raška I. A fraction of MCM 2 proteins remains associated with replication foci during a major part of S-phase. Folia Biol (Praha) 2011; 57(1):3-11. Shukla MS, Syed SH, Goutte-Gattat D, Richard JL, Montel F, Hamiche A, Travers A, Faivre-Moskalenko C, Bednar J, Hayes JJ, Angelov D, Dimitrov S. The docking domain of histone H2A is required for H1 binding and RSC-mediated nucleosome remodeling. Nucleic Acids Res. 2011; 39(7):2559-2570. 2010 and older Křížek, P. and Hagen, G. M. Spatial light modulators in fluorescence microscopy, in Microscopy Science, Technology, Applications and Education (A. Méndez-Vilas and J. Díaz, eds.), FORMATEX, Badajoz, Spain. (2010). Vol. 2, Microscopy Series no. 4, pp: 1366-1377. Křížek M, Křížek P, Šolc J. Astronomické omyly provázející pražský orloj. Československý časopis pro fyziku 2010; 6:337-340. Niedojadlo J, Perret-Vivancos C, Kalland KH, Cmarko D, Cremer T, van Driel R., Fakan S. Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei. Exp Cell Res. 2011; 317(4):433-44. Kepczynski M, Kumorek M, Stepniewski M, Rog T, Kozik B, Jamroz D, Bednar J, Nowakowska M. Behavior of 2,6-bis(decyloxy)naphthalene inside lipid bilayer. J Phys Chem B. 2010; 114(47):15483-94. Smirnov E, Cmarko D, Kováčik L, Hagen GM, Popov A, Raška O, Prieto JL, Ryabchenko B, Amim F, McStay B and Raška I. Replication timing of pseudo-NORs. J Struct Biol. 2010; 173(2):213-8. Raška Ivan. Importance of molecular cell biology investigations in human medicine in the story of the Hutchinson-Gilford progeria syndrome. Interdisc Toxicol. 2010; 3(3):89–93. Gančarčíková M, Zemanová Z, Březinová J, Berková A, Včelíková S, Šmigová J, Michalová K. The role of telomeres and telomerase complex in haematological neoplasia: The lenght of telomeres as a marker of carcinogenesis and prognosis of disease. Prague Medical Report 2010; 111(2):91-105. Syed SH, Goutte-Gattat D, Becker N, Meyer S, Shukla MS, Hayes JJ, Everaers R, Angelov D, Bednar J, Dimitrov S. Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome. Proc Natl Acad Sci U S A 2010; 107(21):9620-5. Scasselatti C, Albi E, Cmarko D, Tiberi C, Cmarkova J, Bouchet-Marquis C, Verschure PJ, van Driel R, Viola Magni M, Fakan S Intranuclear sphingomyelin is associated with transcriptionally active chromatin and plays a role in nuclear integrity. Biol Cell 2010; 102(6):361-375 . Mistríková V, Bednár J Saccharomyces cerevisiae nuclear and nucleolar antigen preservation for immunoelectron microscopy. Folia Biologica (Praha)2010; 56(3):97-109. Bártová E, Harničarová Horáková A, Uhlířová R, Raška I, Galiová G, Orlova D, Kozubek S. Structure and Epigenetics of Nucleoli in Comparison With Non-nucleolar Compartments. J Histochem Cytochem 2010; 58 (5):391-403. Kepczynski M, Bednar J, Ku»micz D, Wydro P, Nowakowska M. Spontaneous Formation of Densely Stacked Multilamellar Vesicles in Dioctadecyldimethylammonium Bromide/Oleosiloxane Mixtures. Langmuir 2010; 26(3):1551-1556. Shukla M, Syed S, Montel F, Faivre-Moskalenko C, Bednar J, Travers A, Angelov D, Dimitrov S. Remosomes, RSC generated non-mobilized particles with approximately 180 bp DNA loosely associated with the histone octamer. Proc Natl Acad Sci U S A 2010; 107:1936-1941. Lewandowska J, Kepczynski M, Bednar J, Rzad E, Moravcikova V, Jachimska B, Nowakowska M. Silicone-stabilized liposomes. Colloid & Polymer Science 2010; 288(1):37-45. Křížek M, Křížek P. Kružnice na astronomickém ciferníku pražského orloje. Matematika - fyzika - informatika 2009/2010, 19:577-586. Maly J, Lampova H, Semeradtova A, Stofik M, Kovacik L. The synthesis and characterization of biotin-silver-dendrimer nanocomposites as novel bioselective labels. Nanotechnology 2009; 20(38):385101. Syed SH, Boulard M, Shukla M, Gautier T, Travers A, Bednar J, Faivre-Moskalenko C, Dimitrov S, Angelov D. The incorporation of the novel histone variant H2AL2 confers unusual structural and functional properties of the nucleosome. Nucleic Acids Res. 2009; (14):4684-95. Montel F, Menoni H, Castelnovo M, Bednar J, Dimitrov S, Angelov D and Faivre-Moskalenko C. The dynamics of individual nucleosomes controls the chromatin condensation pathway: direct AFM visualization of variant chromatin. Biophys J. 2009; 97:544-553 Raška I. 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Fluorescence recovery after photobleaching and photoconversion in multiple arbitrary regions of interest using a programmable array microscope (PAM). Microsc Res Tech. 2009; 72:431-440. Krejci J, Uhlirova R, Galiova G, Kozubek S, Smigova J, Bartova E. Genome-wide reduction in H3K9 acetylation during human embryonic stem cell differentiation. J Cell Physiol. 2009; 219(3):677-87. Raška I. Jak nakoupit elektronový mikroskop aneb investice s rozmyslem. Vesmír 2009; 88(4):262-4. Farkas R, Kovacikova M, Liszekova D, Beno M, Danis P, Rabinow L, Chase BA, Raska I. Exploring some of the physico-chemical properties of the LAMMER protein kinase DOA of Drosophila. Fly (Austin). 2009; 3(2):130-42. Ligasová A, Raska I, Koberna K. Organization of human replicon: singles or zipping couples? J Struct Biol. 2009; 165(3):204-13. Cvacková Z, Masata M, Stanek D, Fidlerová H, Raska I. Chromatin position in human HepG2 cells: although being non-random, significantly changed in daughter cells. J Struct Biol. 2009; 165(2):107-17. Kepczynski M, Bednar J, LewandowskaJ, Staszewska M, Nowakowska M. Hybrid silica-silicone nanocapsules obtained in catanionic vesicles. Cryo-TEM studies. J Nanosci Nanotechnol. 2009; 9(5):3138-43. Marella NV, Zeitz MJ, Malyavantham KS, Pliss A, Matsui S, Goetze S, Bode J, Raska I, Berezney R. Ladder-like amplification of the type I interferon gene cluster in the human osteosarcoma cell line MG63. Chromosome Res. 2008; 16(8):1177-92. Slamenova D., Sramkova M., Chalupa I., Smigova J., Kogan G. Reduction of genotoxic effects of N-nitrosomorpholine in human hepatoma cells and hamster lung cells by carboxymethyl chitin-glucan. Neoplasma. 2008; 55(4):280-5. Raška I. Nový pohled na tvorbu jaderných tělísek. Vesmír. 2008; 87(12):824. Cmarko D, Smigova J, Minichova L, Popov A. Nucleolus: The ribosome factory. Histol Histopathol. 2008; 23(10):1291-8. Solis MT, Pintos B, Prado MJ, Bueno MA, Raska I, Risueno MC, Testillano PS. Early markers of in vitro microspore reprogramming to embryogenesis in olive (Olea europaea L.). Plant Sci. 2008; 174(6):597-605. Cvackova Z, Albring KF, Koberna K, Ligasova A, Huber O, Raska I, Stanek D. Pontin is localized in nucleolar fibrillar centers. Chromosoma 2008; 117(5):487-97. Raska I (2008). The Participation of Professor Karel Raška in the Smallpox Eradication Campaign. In: Mikuláš, D. et al. (ed.). Proceedings of the 24th World Congress of the Czechoslovak Society of Arts and Sciences (SVU), September 8-14, 2008 in Ružomberok, Slovakia. Žilina University, EDIS, Vol. II, pp. 59-71. ISBN 978-80-554-0163-8 . Kalmarova M, Smirnov E, Kovacik L, Popov A, Raska I. Positioning of the NOR-bearing chromosomes in relation to nucleoli in daughter cells after mitosis. Physiol Res. 2008; 57(3):421-5. Kalmarova M, Kovacik L, Popov A, Testillano SP, Smirnov E. Asymmetrical distribution of the transcriptionally component NORs in mitosis. J Struct Biol. 2008; 163(1):40-4. Galiova G, Bartova E, Raska I, Krejci J, Kozubek S. Chromatin changes induced by lamin A/C deficiency and the histone deacetylase inhibitor trichostatin A. Eur J Cell Biol. 2008; 87(5):291-303. Kalmarova M, Smirnov E, Masata M, Koberna K, Ligasova A, Popov A, Raska I. Positioning of NORs and NOR-bearing chromosomes in relation to nucleoli. J Struct Biol. 2007; 160(1):49-56. Cmarko D, Koberna K. Electron Microscopy In Situ Hybridization: Tracking of DNA and RNA Sequences at High Resolution. In: Kuo, J. (Ed.) Electron Microscopy: Methods and Protocols, Second Edition. Humana Press Inc., Totowa, New Jersey, USA pp. 213-228. Methods Mol Biol. 2007; 369:213-28. Titlbach M, Manakova E. Development of the rabbit pancreas with particular regard to the fate of argyrophylic cells. Acta Vet. Brno 2007; 76:509-517. Amzallag A, Vaillant C, Jakob M, Unser M, Bednar J, Kahn JD, Dubochet J, Stasiak A, Maddocks JH. 3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy. Nucleic Acids Res. 2006; 34(18):e125. Raska I, Ruzickova S. Autoantibody Recognition of Cellular and Subcellular Organelles (Chapter 16) In: Pollard, Kenneth Michael (Ed.) Autoantibodies and Autoimmunity: Molecular mechanisms in health and disease.WILEY-VCH 2006, Weinheim, Germany. Kovacikova M, Raska I, Mateasik A, Chase BA, Farkas R. Binding of doa kinase to specific loci in polythene chromosomes of Drosophila melanogaster. Endocr Regul. 2006; 40(1):21-7. Gruenbaum Y, Raska I, Herrmann H. The cell nucleus taking centre stage. Workshop on the functional organization of the cell nucleus. EMBO Reports. 2006; 7(12):1211-5. Doyen CM, Montel F, Gautier T, Menoni H, Claudet C, Delacour-Larose M, Angelov D, Hamiche A, Bednar J, Faivre-Moskalenko C, Bouvet P, Dimitrov S. Dissection of the unusual structural and functional properties of the variant H2A. Bbd nucleosome. EMBO J. 2006; 20;25(18):4234-44. Raska I, Shaw PJ, Cmarko D. New insights into nucleolar architecture and activity. Int Rev Cytol. 2006; 255:177-235. Raska I, Shaw PJ, Cmarko D. Structure and function of the nucleolus in the spotlight. Curr Opin Cell Biol. 2006; 18(3):325-34. Stavreva DA, Kawasaki M, Dundr M, Koberna K, Muller WG, Tsujimura-Takahashi T, Komatsu W, Hayano T, Isobe T, Raska I, Misteli T, Takahashi N, McNally JG. Potential roles for ubiquitin and the proteasome during ribosome biogenesis. Mol Cell Biol. 2006; 26(13):5131-45. Stanek D, Neugebauer KM. The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze. Chromosoma. 2006; 115(5):343-54. E Smirnov, M Kalmarova, K Koberna, Z Zemanova, J Malinsky, M Masata, Z Cvackova, K Michalova, I Raska. NORs and their transcription competence during the cell cycle. Folia Biologica (Praha). 2006; 52:59-70. Li J, Santoro R, Koberna K, Grummt I. The chromatin remodeling complex NoRC controls replication timing of rRNA genes. EMBO J. 2005; 24(1):120-7. Masata M, Malinsky J, Fidlerova H, Smirnov E, Raska I. Dynamics of replication foci in early S phase as visualized by cross-correlation function. J Struct Biol. 2005; 151(1):61-8. Fidlerova H, Masata M, Malinsky J, Fialova M, Cvackova Z, Louzecka A, Koberna K, Berezney R, Raska I. Replication-coupled modulation of early replicating chromatin domains detected by anti-actin antibody. J Cell Biochem. 2005; 94(5):899-916. Pliss A, Koberna K, Vecerova J, Malinsky J, Masata M, Fialova M, Raska I, Berezney R. Spatio-temporal dynamics at rDNA foci: global switching between DNA replication and transcription. J Cell Biochem. 2005; 94(3):554-65. Koberna K, Ligasova A, Malinsky J, Pliss A, Siegel AJ, Cvackova Z, Fidlerova H, Masata M, Fialova M, Raska I, Berezney R. Electron microscopy of DNA replication in 3-D: evidence for similar-sized replication foci throughout S-phase. J Cell Biochem. 2005; 94(1):126-38. Raska I, Koberna K, Malinsky J, Fidlerova H, Masata M. The nucleolus and transcription of ribosomal genes. Biol Cell. 2004; 96(8):579-94. Bednár J, Staněk D, Malínský J, Koberna K, Raška I. Dnešní mikroskopie v biomedicíně. Vesmír. 2004; 83(10):581-585. Vecerova J, Koberna K, Malinsky J, Soutoglou E, Sullivan T, Stewart CL, Raska I, Misteli T. Formation of nuclear splicing factor compartments is independent of lamins A/C. Mol Biol Cell. 2004; 15(11):4904-10. Bednar J, Soukup T. Developmental changes in uncoupling protein 1 and F1-ATPase subunit levels in the golden hamster brown adipose tissue mitochondria as determined by electron microscopy in situimmunocytochemistry. Gen Physiol Biophys. 2003; 22(4):477-86. Erratum in: Gen Physiol Biophys. 2004; 23(3):381. Raska I. Searching for active ribosomal genes. Prog Mol Subcell Biol. 2004; 35:23-56. Phair RD, Scaffidi P, Elbi C, Vecerova J, Dey A, Ozato K, Brown DT, Hager G, Bustin M, Misteli T. Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins. Mol Cell Biol. 2004; 24(14):6393-402. Velicky J, Titlbach M, Lojda Z, Duskova J, Vobecky M, Raska I. The effect of bromide on the ultrastructure of rat thyrocytes. Ann Anat. 2004; 186(3):209-16. Raska I. Oldies but goldies: searching for Christmas trees within the nucleolar architecture. Trends Cell Biol. 2003; 13(10):517-25. Malinska K, Malinsky J, Opekarova M, Tanner W. Visualization of protein compartmentation within the plasma membrane of living yeast cells. Mol Biol Cell. 2003; 14(11):4427-36. Pfannenschmid F, Wimmer VC, Rios RM, Geimer S, Krockel U, Leiherer A, Haller K, Nemcova Y, Mages W. Chlamydomonas DIP13 and human NA14: a new class of proteins associated with microtubule structures is involved in cell division. J Cell Sci. 2003; 116(Pt 8):1449-62. Malinsky J, Koberna K, Bednar J, Stulik J, Raska I. Searching for active ribosomal genes in situ: light microscopy in light of the electron beam. J Struct Biol. 2002; 140(1-3):227-31. Tvrdik D, Djaborkhel R, Nagy A, Eckschlager T, Raska I, Müller J. Cyclin D-cdk6 complex is targeted by p21(WAF) in growth-arrested lymphoma cells. J Struct Biol. 2002; 140(1-3):49-56. Kucharova-Mahmood S, Raska I, Mechler BM, Farkas R. Temporal regulation of Drosophila salivary gland degeneration by the Broad-Complex transcription factors. J Struct Biol. 2002; 140(1-3):67-78. Ruzickova S, Pruss A, Odendahl M, Wolbart K, Burmester GR, Scholze J, Dorner T, Hansen A. Chronic lymphocytic leukemia preceded by cold agglutinin disease: intraclonal immunoglobulin light-chain diversity in V(H)4-34 expressing single leukemic B cells. Blood. 2002; 100(9):3419-22. Erratum in: Blood. 2003; 101(5):1676. Raska I, Aebi U. EMBO workshop "The functional organization of the cell nucleus" held in Prague, Czech Republic, April 18 to 21, 2002. J Struct Biol. 2002; 140(1-3):1-2. Koberna K, Malinsky J, Pliss A, Masata M, Vecerova J, Fialova M, Bednar J, Raska I. Ribosomal genes infocus: new transcripts label the dense fibrillar components and form clusters indicative of "Christmas trees" in situ. J Cell Biol. 2002; 157(5):743-8. Erratum in: J Cell Biol 2002; 158(2):369. Politi V, Perini G, Trazzi S, Pliss A, Raska I, Earnshaw WC, Della Valle G. CENP-C binds the alpha-satellite DNA in vivo at specific centromere domains. J Cell Sci. 2002; 115(Pt 11):2317-27. Kopsky V, Vecerova J, Melcak I, Pliss A, Stulik J, Koberna K, Tomaskova L, Raska I. An ATP-dependentstep is required for the translocation of microinjected precursor mRNA into nuclear speckles. Folia Biol (Praha). 2002; 48(2):69-72. Stokrova J, Korb J, Pliss A, Raska I, Stulik J, Dvorakova M. Overexpression of v-myb oncogene or c-myb proto-oncogene in insect cells: characterization of newly induced nucleolus-like structures accumulating Myb protein. Int J Mol Med. 2002; 9(5):547-54. Stanek D, Koberna K, Pliss A, Malinsky J, Masata M, Vecerova J, Risueno MC, Raska I. Non-isotopic mapping of ribosomal RNA synthesis and processing in the nucleolus. Chromosoma. 2001; 110(7):460-70. Grandi P, Eltsov M, Nielsen I, Raska I. DNA double-strand breaks induce formation of RP-A/Ku foci on in vitro reconstituted Xenopus sperm nuclei. J Cell Sci. 2001; 114(Pt 18):3345-57. Melcak I, Melcakova S, Kopsky V, Vecerova J, Raska I. Prespliceosomal assembly on microinjected precursor mRNA takes place in nuclear speckles. Mol Biol Cell. 2001; 12(2):393-406. Malinsky J, Koberna K, Stanek D, Masata M, Votruba I, Raska I. The supply of exogenous deoxyribonucleotides accelerates the speed of the replication fork in early S-phase. J Cell Sci. 2001; 114(Pt 4):747-50. Raska I. Opportunities in molecular medicine, with an emphasis on the situation of young scientists. In: Perspectives of Science in Central and Eastern Europe (Q. Schiermeier and J. Ockenden, eds.), NATO Science Series. 2001, IOS Press, Amsterodam, pp. 69-74. Muller J, Tvrdik D, Dvorak R, Djaborkhel R, Mandys V, Bednar B, Raska I, Lojda Z. Expression of beta-catenins and cadherins by follicular dendritic cells in human lymph nodes. Acta Histochem. 2000; 102(4):369-80. Raška I. Směrovací číslo v bílkovině. Vesmír. 2000; 79(1):24-25. Raška I. Buněčné jádro. Vesmír. 2000; 79(10):562-572. Djaborkhel R, Tvrdik D, Eckschlager T, Raska I, Muller J. Cyclin A down-regulation in TGFbeta1-arrested follicular lymphoma cells. Exp Cell Res. 2000; 261(1):250-9. Benoist P, Feau P, Pliss A, Vorisek J, Antonelli R, Raska I, Denis-Duphil M. The yeast Ura2 protein thatcatalyses the first two steps of pyrimidines biosynthesis accumulates not in the nucleus but in the cytoplasm, as shown by immunocytochemistry and Ura2-green fluorescent protein mapping. Yeast. 2000; 16(14):1299-312. Raska I, Aebi U, Earnshaw WC. EMBO workshop report. An eclipse over the cell nucleus functional organization of the cell nucleus Prague, August 9-12, 1999. EMBO J. 2000; 19(15):3843-8. Testillano PS, Coronado MJ, Segui JM, Domenech J, Gonzalez-Melendi P, Raska I, Risueno MC. Defined nuclear changes accompany the reprogramming of the microspore to embryogenesis. J Struct Biol. 2000; 129(2-3):223-32. Eltsov M, Grandi P, Raska I. Ultrastructural characterization of RPA-containing domains in nuclei assembled in Xenopus egg extracts. J Struct Biol. 2000; 129(2-3):211-7. Raska I, Spector DL. An "Eclipse" over the cell nucleus at the turn of the century. J Struct Biol. 2000; 129(2-3):101. Stanek D, Kiss T, Raska I. Pre-ribosomal RNA is processed in permeabilised cells at the site of transcription. Eur J Cell Biol. 2000; 79(3):202-7. Koberna K, Stanek D, Malinsky J, Ctrnacta V, Cermanova S, Novotna J, Kopsky V, Raska I. In situ fluorescence visualization of bromouridine incorporated into newly transcribed nucleolar RNA. Acta Histochem. 2000; 102(1):15-20. Melcak I, Cermanova S, Jirsova K, Koberna K, Malinsky J, Raska I. Nuclear pre-mRNA compartmentalization: trafficking of released transcripts to splicing factor reservoirs. Mol Biol Cell. 2000; 11(2):497-510. Koberna K, Stanek D, Malinsky J, Eltsov M, Pliss A, Ctrnacta V, Cermanova S, Raska I. Nuclear organization studied with the help of a hypotonic shift: its use permits hydrophilic molecules to enter into living cells. Chromosoma. 1999; 108(5):325-35. Pliss A, Raska I, Eltsov M. Presence of actin in nuclei of rat NBT II cells. In: Fluorescence microscopy and fluorescent probes (A. Kotyk, ed.), Espero Press. 1999, pp. 223-234. Raska I, Reimer G. Human autoantibodies identify a protein in dense fibrillar and granular components of the nucleolus. Acta Histochem. 1999; 101(2):157-66. Raska I, Pliss A, Mandys V, Risueno MC, Lojda Z. Processing of free cells for electron microscopy using a fibrin clot. Acta Histochem. 1998; 100(3):309-13. Gonzalez-Melendi P, Testillano PS, Mena CG, Muller S, Raska I, Risueno MC. Histones and DNA ultrastructural distribution in plant cell nucleus: a combination of immunogold and cytochemical methods. Exp Cell Res. 1998; 242(1):45-59. Koberna K, Landa V, Kanka J, Pliss A, Eltsov M, Stanek D, Raska I. Non-isotopic detection of nucleolar transcription in pre-implantation mouse embryos. Reprod Nutr Dev. 1998; 38(1):117-26. Velicky J, Titlbach M, Lojda Z, Duskova J, Vobecky M, Strbak V, Raska I. Long-term action of potassium bromide on the rat thyroid gland. Acta Histochem. 1998; 100(1):11-23. Velicky J, Titlbach M, Lojda Z, Jelinek F, Vobecky M, Raska I. Expression of the proliferating cell nuclear antigen (PCNA) in the rat thyroid gland after exposure to bromide. Acta Histochem. 1997; 99(4):391-9. Stanek D, Vencovsky J, Kafkova J, Raska I. Heterogenous nuclear RNP C1 and C2 core proteins are targets for an autoantibody found in the serum of a patient with systemic sclerosis and psoriatic arthritis. Arthritis Rheum. 1997; 40(12):2172-7. Velicky J, Titlbach M, Duskova J, Vobecky M, Strbak V, Raska I. Potassium bromide and the thyroid gland of the rat: morphology and immunohistochemistry, RIA and INAA analysis. Ann Anat. 1997; 179(5):421-31. Melcak I, Raska I. Structural organization of the pre-mRNA splicing commitment: a hypothesis. J Struct Biol. 1996; 117(3):189-94. Schul W, Groenhout B, Koberna K, Takagaki Y, Jenny A, Manders EM, Raska I, van Driel R, de Jong L. The RNA 3' cleavage factors CstF 64 kDa and CPSF 100 kDa are concentrated in nuclear domains closely associated with coiled bodies and newly synthesized RNA. EMBO J. 1996; 15(11):2883-92. Melcak I, Risueno MC, Raska I. Ultrastructural nonisotopic mapping of nucleolar transcription sites in onion protoplasts. J Struct Biol. 1996; 116(2):253-63.